Microscopic Colitis

Lymphocytic colitis, lymphocytes crowding the lining
Lymphocytic colitis, lymphocytes crowding the lining

Microscopic colitis (MC) is a chronic inflammatory bowel disease that causes chronic, watery, non-bloody diarrhea while the colon looks normal or almost normal at colonoscopy; the diagnosis is made by examining biopsies under a microscope. The 2021 European guideline from United European Gastroenterology and the European Microscopic Colitis Group puts the pooled prevalence at 119 per 100,000 people and finds microscopic colitis in 12.8% of patients with unexplained chronic watery diarrhea. Women and people over 60 are affected most often, and the symptoms overlap with diarrhea-predominant irritable bowel syndrome.

  1. Overview
  2. Epidemiology
  3. Pathophysiology
  4. Drug Associations
  5. Clinical Presentation
  6. Diagnosis
  7. Treatment
  8. Prognosis and Disease Course
  9. Key Research Papers
  10. Connections

Overview

Microscopic colitis is a chronic inflammatory bowel disease in which the colon looks normal or almost normal at colonoscopy while biopsies show distinct abnormalities. The 2021 European guideline from United European Gastroenterology and the European Microscopic Colitis Group (UEG/EMCG) describes three histological subtypes: collagenous colitis (CC), lymphocytic colitis (LC) and incomplete microscopic colitis.

The guideline's histological criteria are a thickened subepithelial collagen band of 10 micrometers or more with an increased inflammatory infiltrate in the lamina propria for collagenous colitis, and 20 or more intraepithelial lymphocytes per 100 surface epithelial cells with an increased lamina propria infiltrate and no significantly thickened collagen band for lymphocytic colitis. Incomplete forms are defined by a band thicker than 5 but thinner than 10 micrometers, or by more than 10 but fewer than 20 intraepithelial lymphocytes.

The guideline describes the most common symptom as chronic, watery, non-bloody diarrhea, often with fecal urgency, nocturnal stools and fecal incontinence. Because the symptoms and the endoscopic appearance overlap with diarrhea-predominant irritable bowel syndrome, the guideline states that microscopic colitis should be ruled out in people who meet the criteria for a functional bowel disorder, especially when risk factors are present or IBS treatment has not worked; two meta-analyses it cites found microscopic colitis in 9% of patients with diarrhea-predominant functional disorders.

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Epidemiology

The UEG/EMCG guideline gives a pooled incidence of 11.4 cases per 100,000 person-years and a pooled prevalence of 119 per 100,000 people (50.1 per 100,000 for collagenous and 61.7 per 100,000 for lymphocytic colitis). In patients with unexplained chronic watery diarrhea, the pooled frequency of microscopic colitis was 12.8%.

A 2015 meta-analysis of 25 studies (Tong and colleagues) found pooled incidence rates of 4.14 per 100,000 person-years for collagenous colitis and 4.85 for lymphocytic colitis. Incidence rose steadily before 2000 and has since been stable in the United States, Sweden and Spain. The female-to-male incidence rate ratio was 3.05 for collagenous and 1.92 for lymphocytic colitis, and the median age at diagnosis was 64.9 years for collagenous and 62.2 years for lymphocytic colitis; incidence increased with age. In the three largest studies reviewed by the European guideline, about 72% of patients were women, and people over 65 had a 5.25 times higher probability of microscopic colitis.

Smoking: the guideline states that former and especially current smoking is associated with a higher risk of both subtypes. In the meta-analysis it cites, current smokers had an odds ratio of 2.99 compared with never smokers, and former smokers 1.6. It found insufficient evidence on whether stopping smoking changes the disease course.

Associated conditions: in a Swedish multicenter study of 116 patients with collagenous colitis (Vigren and colleagues, 2013), 30.2% had one or more autoimmune disorders, most often celiac disease (12.9%) and autoimmune thyroid disease (10.3%), followed by Sjögren's syndrome (3.4%) and diabetes mellitus (1.7%). For celiac disease, the European guideline cites one large prospective study with celiac disease in 3.3% of patients with microscopic colitis versus 0.4% of controls, and rates of 2% to 4% in large cohort studies, lower than older case series had reported. It also states that developing microscopic colitis was not associated with gluten intake.

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Pathophysiology

The UEG/EMCG guideline states that the cause of microscopic colitis is complex and multifactorial and may include luminal factors, immune dysregulation and genetic predisposition, and that the mechanisms are poorly understood, with scarce evidence.

In collagenous colitis, the guideline describes the thickened subepithelial collagen band as often having an irregular deeper edge that may contain trapped capillaries, red blood cells and inflammatory cells. The surface epithelium shows focal damage, including detachment from the basement membrane, and the lamina propria carries a mild to moderate infiltrate dominated by plasma cells and lymphocytes, with eosinophils and mast cells. In lymphocytic colitis, the defining feature is the raised count of intraepithelial lymphocytes in the surface epithelium.

Factors studied in relation to the disease include:

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Drug Associations

The UEG/EMCG guideline states that chronic or frequent use of PPIs, NSAIDs or SSRIs is associated with an increased risk of microscopic colitis, and adds that this does not imply a causal relationship. In its pooled analysis of retrospective case-control studies, the odds ratio was 2.95 for PPI use (4.69 for continuous use over 4 to 12 months), 2.40 for NSAIDs and 2.98 for SSRIs. The guideline notes that the studies used different definitions of drug exposure and lacked data on symptoms after withdrawal or re-exposure, which limits conclusions about causality.

Individual studies, all case-control designs:

Withdrawal reports: the European guideline analyzed 62 case reports and 13 case-control studies of drug-associated microscopic colitis. PPIs were the most reported drugs. Resolution of diarrhea with normal histology after stopping the PPI was reported in 4 cases with omeprazole, 16 with lansoprazole and 1 with esomeprazole, and in 10 cases a switch to another PPI did not bring the diarrhea back, which the guideline says contradicts the idea of a class effect. The guideline suggests considering withdrawal of any drug whose start fits the onset of diarrhea in time, graded as a weak recommendation on very low-quality evidence.

Other medicines described in the literature:

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Clinical Presentation

The UEG/EMCG guideline reports chronic, watery, non-bloody diarrhea in 84% to 100% of patients across 22 studies. Onset was acute in about one third of cases, and in a European prospective registry diarrhea had lasted 6 months before diagnosis in 43% of patients. A large Danish study of 539 patients recorded an average of 6 to 7 bowel movements per day.

Accompanying symptoms reported in the guideline's evidence summary:

Colonoscopy findings: across 80 articles covering 1,582 patients, the guideline found visible lesions or alterations in 38.8%, including isolated linear ulcerations, pseudomembranes, irregular vascular patterns, mucosal lacerations, redness, swelling and nodularity. It describes these findings as nonspecific, so the diagnosis depends on biopsy.

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Diagnosis

Diagnosis rests on a compatible clinical picture plus the histological findings described in the Overview. The UEG/EMCG guideline's statements and recommendations on diagnosis:

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Treatment

This section reports what trials, systematic reviews and the 2021 UEG/EMCG guideline found. Decisions about medicines belong with a clinician.

Medication Review and Smoking

The guideline suggests considering withdrawal of any drug whose introduction fits the onset of diarrhea in time (weak recommendation, very low-quality evidence; see Drug Associations). It found insufficient evidence on whether stopping smoking changes the disease course.

Budesonide for Active Collagenous Colitis

The guideline recommends oral budesonide to induce remission in collagenous colitis (strong recommendation, moderate-quality evidence) and describes it as currently the only licensed drug for microscopic colitis. Placebo-controlled trials:

The 2017 Cochrane review of collagenous colitis (Kafil and colleagues; 12 trials, 476 participants) found clinical response in 81% of budesonide patients vs 17% on placebo, and maintained response in 68% vs 20%, rating the evidence as low quality.

Budesonide for Active Lymphocytic Colitis

The 2017 Cochrane review of lymphocytic colitis (Chande and colleagues; 5 trials, 149 participants) found clinical response in 88% of budesonide patients vs 38% on placebo, on low-quality evidence. The European guideline recommends budesonide to induce remission in lymphocytic colitis.

Budesonide Maintenance

A 2024 meta-analysis (Tome and colleagues; 35 studies) found a pooled relapse rate of 53% after budesonide was stopped, and no differences in adverse events such as metabolic bone disease, high blood pressure, high blood sugar or cataracts/glaucoma between maintenance budesonide and placebo or non-steroid treatments. The European guideline recommends budesonide to maintain remission in collagenous colitis and suggests it for lymphocytic colitis. It states that serious adverse events are not increased with budesonide in microscopic colitis, and that osteoporotic fracture risk does not seem to be increased, although prolonged use might lower bone mineral density.

Other Treatments Studied

Disease That Does Not Respond to Budesonide

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Prognosis and Disease Course

In a European prospective registry of 381 newly diagnosed patients with a full year of follow-up (Verhaegh and colleagues, 2021), 49% had a chronic active or relapsing course, 40% reached sustained remission after treatment and 11% had a quiescent course. Symptoms and quality of life generally improved after 3 months, but a relapsing or chronic active course was linked to more symptoms and poorer quality of life at one year.

Relapse after stopping budesonide is common in the trials: 8 of 10 patients within 8 weeks (Bonderup 2003), 82.1% during treatment-free follow-up after a year of low-dose maintenance (Münch 2016), and a pooled 53% in the 2024 meta-analysis.

The European guideline states that health-related quality of life is impaired in microscopic colitis, depending on disease activity, severity and other conditions, and that baseline quality of life was lower than in patients with other intestinal and proctological disorders. In a population-based study of 116 patients with collagenous colitis, quality of life was impaired during active disease, while patients in remission scored similarly to the background population.

Long-term findings:

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Key Research Papers

  1. Miehlke S, Guagnozzi D, Zabana Y, et al. (2021). European guidelines on microscopic colitis: United European Gastroenterology and European Microscopic Colitis Group statements and recommendations. United European Gastroenterology Journal — PubMed PMID: 33619914
  2. Miehlke S, Heymer P, Bethke B, et al. (2002). Budesonide treatment for collagenous colitis: a randomized, double-blind, placebo-controlled, multicenter trial. Gastroenterology — PubMed PMID: 12360457
  3. Baert F, Schmit A, D'Haens G, et al. (2002). Budesonide in collagenous colitis: a double-blind placebo-controlled trial with histologic follow-up. Gastroenterology — PubMed PMID: 11781276
  4. Bonderup OK, Hansen JB, Birket-Smith L, et al. (2003). Budesonide treatment of collagenous colitis: a randomised, double blind, placebo controlled trial with morphometric analysis. Gut — PubMed PMID: 12524408
  5. Miehlke S, Madisch A, Kupcinskas L, et al. (2014). Budesonide is more effective than mesalamine or placebo in short-term treatment of collagenous colitis. Gastroenterology — PubMed PMID: 24440672
  6. Kafil TS, Nguyen TM, Patton PH, et al. (2017). Interventions for treating collagenous colitis. Cochrane Database of Systematic Reviews — PubMed PMID: 29127772
  7. Miehlke S, Madisch A, Karimi D, et al. (2009). Budesonide is effective in treating lymphocytic colitis: a randomized double-blind placebo-controlled study. Gastroenterology — PubMed PMID: 19303012
  8. Miehlke S, Aust D, Mihaly E, et al. (2018). Efficacy and Safety of Budesonide, vs Mesalazine or Placebo, as Induction Therapy for Lymphocytic Colitis. Gastroenterology — PubMed PMID: 30195447
  9. Chande N, Al Yatama N, Bhanji T, et al. (2017). Interventions for treating lymphocytic colitis. Cochrane Database of Systematic Reviews — PubMed PMID: 28702956
  10. Miehlke S, Madisch A, Bethke B, et al. (2008). Oral budesonide for maintenance treatment of collagenous colitis: a randomized, double-blind, placebo-controlled trial. Gastroenterology — PubMed PMID: 18926826
  11. Bonderup OK, Hansen JB, Teglbjaerg PS, et al. (2009). Long-term budesonide treatment of collagenous colitis: a randomised, double-blind, placebo-controlled trial. Gut — PubMed PMID: 18669576
  12. Münch A, Bohr J, Miehlke S, et al. (2016). Low-dose budesonide for maintenance of clinical remission in collagenous colitis: a randomised, placebo-controlled, 12-month trial. Gut — PubMed PMID: 25425655
  13. Tome J, Tariq R, Hassett LC, et al. (2024). Effectiveness and Safety Profile of Budesonide Maintenance in Microscopic Colitis: A Systematic Review and Meta-Analysis. Inflammatory Bowel Diseases — PubMed PMID: 37589651
  14. Bonderup OK, Nielsen GL, Dall M, et al. (2018). Significant association between the use of different proton pump inhibitors and microscopic colitis: a nationwide Danish case-control study. Alimentary Pharmacology & Therapeutics — PubMed PMID: 30039564
  15. Masclee GM, Coloma PM, Kuipers EJ, et al. (2015). Increased risk of microscopic colitis with use of proton pump inhibitors and non-steroidal anti-inflammatory drugs. American Journal of Gastroenterology — PubMed PMID: 25916221
  16. Verhaegh BP, de Vries F, Masclee AA, et al. (2016). High risk of drug-induced microscopic colitis with concomitant use of NSAIDs and proton pump inhibitors. Alimentary Pharmacology & Therapeutics — PubMed PMID: 26956016
  17. Tong J, Zheng Q, Zhang C, et al. (2015). Incidence, prevalence, and temporal trends of microscopic colitis: a systematic review and meta-analysis. American Journal of Gastroenterology — PubMed PMID: 25623658
  18. Kaneko S, Matsuda K, Mizuta Y, et al. (2021). Severe spruelike enteropathy and collagenous colitis caused by olmesartan. BMC Gastroenterology — PubMed PMID: 34556042
  19. Cohen Y, Münch A, Levartovsky A, et al. (2026). Immunomodulatory therapies and emerging drug associations with microscopic colitis: A global pharmacovigilance analysis. Digestive and Liver Disease — PubMed PMID: 42151032
  20. Vigren L, Tysk C, Ström M, et al. (2013). Celiac disease and other autoimmune diseases in patients with collagenous colitis. Scandinavian Journal of Gastroenterology — PubMed PMID: 23800241
  21. Tome J, Tariq R, Chelf CJ, et al. (2024). Effectiveness of Bile Acid Sequestrants in Microscopic Colitis and Utility of Bile Acid Testing: A Systematic Review and Meta-analysis. American Journal of Gastroenterology — PubMed PMID: 38864509
  22. Fine KD, Lee EL (1998). Efficacy of open-label bismuth subsalicylate for the treatment of microscopic colitis. Gastroenterology — PubMed PMID: 9428215
  23. El Hage Chehade N, Ghoneim S, Shah S, et al. (2024). Efficacy and Safety of Vedolizumab and Tumor Necrosis Factor Inhibitors in the Treatment of Steroid-refractory Microscopic Colitis: A Systematic Review and Meta-analysis. Journal of Clinical Gastroenterology — PubMed PMID: 37668427
  24. Verhaegh BPM, Münch A, Guagnozzi D, et al. (2021). Course of Disease in Patients with Microscopic Colitis: A European Prospective Incident Cohort Study. Journal of Crohn's and Colitis — PubMed PMID: 33433605
  25. Bergman D, Khalili H, Roelstraete B, et al. (2021). Microscopic colitis and risk of cancer - a population-based cohort study. Journal of Crohn's and Colitis — PubMed PMID: 32710780
  26. Khalili H, Bergman D, Roelstraete B, et al. (2020). Mortality of Patients With Microscopic Colitis in Sweden. Clinical Gastroenterology and Hepatology — PubMed PMID: 31857243

PubMed Topic Searches

  1. Microscopic colitis diagnosis and biopsy — PubMed
  2. Collagenous colitis treatment budesonide RCT — PubMed
  3. Lymphocytic colitis clinical features and treatment — PubMed
  4. Microscopic colitis NSAID and PPI drug-induced — PubMed
  5. Microscopic colitis SSRI sertraline lansoprazole — PubMed
  6. Microscopic colitis and celiac disease association — PubMed
  7. Microscopic colitis epidemiology incidence prevalence — PubMed
  8. Collagenous colitis pathophysiology collagen band — PubMed
  9. Microscopic colitis bile acid malabsorption — PubMed
  10. Budesonide maintenance therapy microscopic colitis relapse — PubMed
  11. Microscopic colitis quality of life patient outcomes — PubMed
  12. Microscopic colitis vs IBS misdiagnosis chronic diarrhea — PubMed

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Connections

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