Yacon Root and Its Fructooligosaccharides


Yacon (Smallanthus sonchifolius) is a perennial plant of the daisy family (Asteraceae) from the Andean region of South America. Its large tuberous roots are commonly eaten as a fruit. What makes yacon unusual among root crops is the kind of sugar it stores: the main component of its carbohydrate is fructooligosaccharides (FOS), short chains of fructose that human digestion does not break down, so they travel on to the large intestine and feed bacteria there. This page sets out where yacon comes from, how much fructooligosaccharide the root holds and how storage and processing change that amount, what the human studies on bowel habit, gut bacteria, blood sugar, insulin and body weight found (with the size of each study), what is known about yacon syrup and yacon flour, the digestive side effects reported at higher intakes, why the leaf is a separate product with its own safety record, and what is still not known. Each finding is attributed to the study that reported it.


Table of Contents

  1. The Andean Root and Its Traditional Uses
  2. What Yacon Root Contains
  3. How Storage, Drying and Processing Change It
  4. How Fructooligosaccharides Work as a Prebiotic Fibre
  5. Bowel Transit and Constipation in Human Studies
  6. Gut Bacteria in Human Studies
  7. Blood Sugar and Insulin in Human Studies
  8. Body Weight and Appetite in Human Studies
  9. What the Pooled Analyses Report
  10. Yacon Syrup and Yacon Flour
  11. Digestive Side Effects and Other Reported Reactions
  12. The Leaf Is a Separate Product
  13. What Is Not Known
  14. Key Research Papers
  15. Connections
  16. Featured Videos

The Andean Root and Its Traditional Uses

Yacon belongs to the Asteraceae, the same large plant family as sunflowers, chicory, dandelion and elecampane, and it is native to the Andes. A 2026 review of its traditional uses describes the tuberous roots as commonly eaten as a "functional fruit", while the leaves are often used for composting or simply treated as farm waste in some areas (Li and Gu, 2026).

Two traditions run side by side. The root has been grown and eaten mainly as food, and the authors of a 2010 case report note that yacon tubers have traditionally been used as a source of natural sweetener and syrup (Yun and colleagues, 2010). The leaves have a separate history: a 2012 safety study states that yacon leaves have been used since pre-Columbian times in the Andean region to make a medicinal herbal tea (Barcellona and colleagues, 2012), and a 2011 study notes that the leaves have traditionally been used as an anti-diabetic herb in several countries, including Brazil (de Oliveira and colleagues, 2011). The leaf story is covered in its own section below, because the evidence on it is different.

The crop has spread well beyond South America. One analysis of a yacon concentrate from New Zealand describes it as made from the roots of a cultivar called 'New Zealand', first grown there in the 1980s (Chessum and colleagues, 2022). Most of the human trials described below come from Brazil, with others from Argentina, Switzerland and China.

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What Yacon Root Contains

The headline component is fructooligosaccharides, together with some longer inulin-type chains. Reviews describe yacon as unusual for its high fructooligosaccharide and inulin content, alongside phenolic compounds, flavonoids and, in the plant as a whole, sesquiterpene lactones (Delgado and colleagues, 2013; Silva and colleagues, 2024).

How much fructooligosaccharide a root holds varies enormously:

Chlorogenic acid and caffeic acid were the major phenolic compounds in a New Zealand yacon concentrate (Chessum and colleagues, 2022). A 2026 pilot study using high-resolution mass spectrometry identified 82 chemical components in yacon root (Pan and colleagues, 2026).

The practical point for a reader is that "yacon" is not one fixed composition. The variety grown, where it was grown and how long it sat after harvest all change how much fructooligosaccharide ends up on the plate.

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How Storage, Drying and Processing Change It

Yacon does not hold its fructooligosaccharides well once it is out of the ground. Narai-Kanayama and colleagues (2007) stored roots at 8 °C and 90% relative humidity, conditions previously recommended for the crop, and still found that the shorter fructooligosaccharide chains decreased markedly while free fructose increased. The longer chains (nine or more fructose units) decreased only slightly. The authors traced the loss mainly to an enzyme in the root itself, fructan 1-exohydrolase, which snips fructose units off the short chains. In plain terms, a stored yacon root slowly converts part of its fibre-like sugar into ordinary fruit sugar.

The authors of a 2019 trial using yacon flour make the same point in their introduction: fructooligosaccharides in the fresh root are rapidly broken down, and they chose a dried product, flour, because dehydration keeps the fructooligosaccharides stable (Machado and colleagues, 2019). Most of the human trials below used syrup, flour or freeze-dried powder rather than fresh root for this reason.

For syrup, a Brazilian analysis followed fructooligosaccharides and chlorogenic acid through each stage of production. Both were maintained through pulping, enzyme treatment and microfiltration, and both became more concentrated in the final vacuum-concentration step (Silva and colleagues, 2018).

No study read for this page measured what boiling, baking or frying in a home kitchen does to the fructooligosaccharides of fresh yacon root, so how much survives cooking is an open question on this page.

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How Fructooligosaccharides Work as a Prebiotic Fibre

Fructooligosaccharides are short chains of fructose units. Human digestive enzymes do not break the bonds that join those units, so the chains pass through the stomach and small intestine largely intact and reach the colon. There, some groups of bacteria can use them as food and others cannot, which is why they are called prebiotic: they shift which bacteria grow. The chemistry of these fructans, and of their longer relative inulin, is explained in detail on the Elecampane, Inulin and the Gut page, and the general idea of prebiotics on the Prebiotics page.

Reviews of yacon summarise the proposed chain of events this way. Fructooligosaccharide intake favours the growth of bacteria regarded as health-promoting, such as bifidobacteria, while reducing some disease-causing groups. When the bacteria ferment the fructooligosaccharides, they produce short-chain fatty acids, which act as fuel and as signalling molecules in the immune response, in blood sugar control and in fat metabolism (Caetano and colleagues, 2016). An earlier review adds that fructooligosaccharide and inulin intake improves the growth of bifidobacteria in the colon and enhances mineral absorption (Delgado and colleagues, 2013). These reviews describe a mechanism; they are not themselves proof that eating yacon produces a health benefit in people.

Animal work suggests the whole root may not behave exactly like purified fructooligosaccharides. In rats, a feed containing 10% yacon root, matched for fructooligosaccharide content to a feed containing 5% commercial fructooligosaccharides, produced a twofold greater concentration of short-chain fatty acids in the caecum (the pouch at the start of the large intestine) and a different mix of gut bacteria. Some bacterial groups appeared only in the rats fed yacon. The authors concluded that the effects of the yacon root differed from those of the purified product (Utami and colleagues, 2013). In guinea pigs, a diet rich in yacon fructooligosaccharides increased bifidobacteria and lactobacilli and raised short-chain fatty acid levels in the caecum (Campos and colleagues, 2012). Whether the same difference between whole root and purified fibre holds in people has not been tested directly.

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Bowel Transit and Constipation in Human Studies

Bowel habit is the outcome with the most consistent human findings for yacon.

A 2025 meta-analysis that pooled 12 studies found that yacon root lowered stool pH (more acidic stool, a sign of fermentation), softened stools and made defecation easier, reported as standardised effect sizes of −1.12, 0.94 and 4.03 respectively (Pan and colleagues, 2025). A standardised effect size is a unit-free measure used to combine studies that measured things in different ways. Very wide uncertainty ranges came with some of these figures, and the authors describe the included studies as of limited quality. More on bowel habit and its causes is on the Constipation page.

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Gut Bacteria in Human Studies

Several trials looked directly at which bacteria were in stool before and after yacon.

Two findings complicate the simple "more bifidobacteria" story. First, in a 6-week trial of yacon flour in 26 adults with excess weight, short-chain fatty acids in stool fell in both the yacon and the control group, and intestinal permeability (how "leaky" the gut lining is) did not change (Machado and colleagues, 2021). Second, a crossover trial in 40 women found that the bacteria a person already carried shaped how they responded: six volunteers did not respond to yacon syrup at all, and a higher starting abundance of the phylum Actinobacteria (P = 0.021) and of the order Bifidobacteriales (P = 0.013) went with a better insulin response (Sales and colleagues, 2023). A change in which bacteria are present is also not, by itself, the same as a health benefit; the Almonds and the Gut Microbiome page discusses that gap for another food.

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Blood Sugar and Insulin in Human Studies

The findings on blood sugar depend on whether a study looked at a single meal or at weeks of intake, and the pooled results are weaker than the individual trials.

A 2025 meta-analysis of seven randomised trials with 239 participants found that, overall, yacon had no statistically significant effect on fasting blood sugar, insulin, the insulin-resistance score, total cholesterol, HDL cholesterol or triglycerides. In subgroups, fasting blood sugar fell in trials lasting more than 8 weeks and in people over 40, and LDL cholesterol fell with more than 8 weeks of intake, particularly in women and people over 40. The authors concluded that yacon use in adults does not lead to significant improvements in lipid profiles or glycaemic measures (Nilghaz and colleagues, 2025). Background on blood sugar disorders is on the Type 2 Diabetes page.

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Body Weight and Appetite in Human Studies

A 2025 meta-analysis of seven randomised trials with 246 participants reported that yacon intake was associated with weight reduction (a weighted mean difference of −8.22 kilograms, with a 95% confidence interval running from −16.01 to −0.43). It found no significant effect on body mass index, waist circumference or C-reactive protein, a blood marker of inflammation. In subgroups, weight reductions were significant in people aged 40 and over, in women, and with more than 8 weeks of intake (Porbafrani and colleagues, 2026). The very wide confidence interval means the true average effect could be large or small. A separate 2025 meta-analysis of 12 studies reported a reduction in body mass index (standardised effect size −0.81) and a tendency toward lower body weight and waist circumference (Pan and colleagues, 2025). The two analyses disagree on body mass index, which reflects how few and how small the underlying trials are.

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What the Pooled Analyses Report

Five reviews published between 2024 and 2026 bring the yacon trials together. They draw on largely the same small pool of studies, which is worth keeping in mind when their conclusions seem to differ.

Taken together, the most consistent findings are on bowel habit. The findings on body weight lean in one direction but rest on few, small trials, and the findings on blood sugar and blood fats are mixed once trials are pooled.

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Yacon Syrup and Yacon Flour

Because the fresh root loses fructooligosaccharides in storage, much of the yacon sold far from the Andes is processed. Two forms dominate the research.

Yacon syrup is made by pulping the root, treating and filtering the juice, and concentrating it. A Brazilian analysis found that, besides fructooligosaccharides and chlorogenic acid, the syrup contained minerals such as potassium, calcium and phosphorus and essential amino acids such as tryptophan, valine and threonine (Silva and colleagues, 2018). A New Zealand yacon concentrate held 17.6 to 52.7 grams of fructooligosaccharides per 100 grams, 565 to 785 milligrams of phenolic compounds per 100 grams (as gallic acid equivalents), and tested at a glycaemic index of 40, which classifies it as a low-glycaemic-index food (Chessum and colleagues, 2022). The wide fructooligosaccharide range in a single type of product shows how much batches can differ. Syrup is still a concentrated sweet product, and the trials gave it in measured amounts, such as 20 grams a day or 40 grams with a single breakfast.

Yacon flour is dried, ground root. The Brazilian weight-loss trials gave 25 grams a day in a breakfast drink, and the trial in preschool children used flour mixed into food (see below). A freeze-dried yacon powder was used in the trial of older adults, whose authors described it as practical, easy and safe to use and store (Scheid and colleagues, 2014).

The fresh root eaten as a vegetable or fruit is the whole-food form. It has been tested less than the processed forms, and its fructooligosaccharide content depends on variety and on how long it has been stored, as described above.

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Digestive Side Effects and Other Reported Reactions

Fructooligosaccharides are fermented by gut bacteria, and fermentation makes gas. Fructans are also one of the groups in the FODMAP family (fermentable oligosaccharides, disaccharides, monosaccharides and polyols), which are a common trigger of symptoms in irritable bowel syndrome; see the Low-FODMAP Diet for Irritable Bowel Syndrome (IBS) page. What the yacon trials themselves reported:

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The Leaf Is a Separate Product

Yacon leaf tea is a different product from yacon root, with a different chemistry and a mixed safety record. The leaves contain sesquiterpene lactones, of which enhydrin is the main one, concentrated on small surface hairs, as well as chlorogenic acids. No human trial of yacon leaf tea was found for this page; the evidence comes from rats and cells.

The two rat studies used different preparations and reached opposite conclusions, and neither was in people. None of the root findings on this page apply to the leaf, and the leaf findings do not describe the root, which is eaten as food.

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What Is Not Known

Decisions about using any food in large amounts for a medical purpose, especially alongside blood-sugar-lowering medicines, belong with a clinician.

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Key Research Papers

  1. Pan LH, Yao ZW, Hu WF, Jia HT, Ren WL, Wang PP, Ling SP, Zhu H. Yacon root is a functional food beneficial for human health: a meta-analysis of clinical trials. Frontiers in Nutrition. 2025;12:1739768. PubMed PMID: 41459090
  2. Geyer M, Manrique I, Degen L, Beglinger C. Effect of yacon (Smallanthus sonchifolius) on colonic transit time in healthy volunteers. Digestion. 2008;78(1):30-33. PubMed PMID: 18781073
  3. Pereira MF, Soares IC, Cabral MM, de Freitas PA, Sousa GMA, Magalhães SC, Carioca AAF, de Oliveira MRC, Magalhães FEA, de Oliveira AC, Farias-Pereira R, de Oliveira KA. Impacts of Yacon Syrup (Smallanthus sonchifolius) on Human Health: A Systematic Review of Scientific Evidence from the Last Decade. Nutrients. 2025;17(5):888. PubMed PMID: 40077758
  4. Porbafrani F, Samadi M, Parastouei K. The Effects of Yacon Consumption on Body Weight and C-reactive Protein: A Systematic Review and Meta-analysis of Randomized Controlled Trials. Current Therapeutic Research, Clinical and Experimental. 2026;104:100817. PubMed PMID: 41685137
  5. Nilghaz M, Sheikhhossein F, Samarin MM, Amini MR, Elahikhah M, Jalalzadeh M, Khakbaz M, Lohrasbi N, Etesamnia S, Torkizadeh F, Hekmatdoost A. The Effect of Yacon Consumption on Glycemic Control and Lipid Profiles: A Systematic Review and Meta-Analysis of Randomised Controlled Trials. Endocrinology, Diabetes & Metabolism. 2025;8(6):e70121. PubMed PMID: 41152200
  6. Silva IFD, Bragante WR, Junior RCM, Laurindo LF, Guiguer EL, Araújo AC, Fiorini AMR, Nicolau CCT, Oshiiwa M, Lima EP, Barbalho SM, Silva LR. Effects of Smallanthus sonchifolius Flour on Metabolic Parameters: A Systematic Review. Pharmaceuticals (Basel). 2024;17(5):658. PubMed PMID: 38794228
  7. Genta S, Cabrera W, Habib N, Pons J, Carillo IM, Grau A, Sánchez S. Yacon syrup: beneficial effects on obesity and insulin resistance in humans. Clinical Nutrition. 2009;28(2):182-187. PubMed PMID: 19254816
  8. Scheid MM, Genaro PS, Moreno YM, Pastore GM. Freeze-dried powdered yacon: effects of FOS on serum glucose, lipids and intestinal transit in the elderly. European Journal of Nutrition. 2014;53(7):1457-1464. PubMed PMID: 24398786
  9. Machado AM, da Silva NBM, Chaves JBP, Alfenas RCG. Consumption of yacon flour improves body composition and intestinal function in overweight adults: A randomized, double-blind, placebo-controlled clinical trial. Clinical Nutrition ESPEN. 2019;29:22-29. PubMed PMID: 30661690
  10. Machado AM, da Silva NBM, de Freitas RMP, de Freitas MBD, Chaves JBP, Oliveira LL, Martino HSD, de Cássia Gonçalves Alfenas R. Effects of yacon flour associated with an energy restricted diet on intestinal permeability, fecal short chain fatty acids, oxidative stress and inflammation markers levels in adults with obesity or overweight: a randomized, double blind, placebo controlled clinical trial. Archives of Endocrinology and Metabolism. 2021;64(5):597-607. PubMed PMID: 34033301
  11. Ribeiro PVM, Veloso TG, de Oliveira LL, Mendes NP, Alfenas RCG. Consumption of yacon flour and energy-restricted diet increased the relative abundance of intestinal bacteria in obese adults. Brazilian Journal of Microbiology. 2023;54(4):3085-3099. PubMed PMID: 37807018
  12. Adriano LS, Dionísio AP, Abreu FAP, Carioca AAF, Zocolo GJ, Wurlitzer NJ, Pinto CO, de Oliveira AC, Sampaio HAC. Yacon syrup reduces postprandial glycemic response to breakfast: A randomized, crossover, double-blind clinical trial. Food Research International. 2019;126:108682. PubMed PMID: 31732062
  13. Sales SDS, Dionísio AP, Adriano LS, Melo BRC, Abreu FAP, Sampaio HAC, Silva IDCGD, Carioca AAF. Previous gut microbiota has an effect on postprandial insulin response after intervention with yacon syrup as a source of fructooligosaccharides: a randomized, crossover, double-blind clinical trial. Nutrition. 2023;109:111948. PubMed PMID: 36736091
  14. Adriano LS, Dionísio AP, Pinto de Abreu FA, Wurlitzer NJ, Cordeiro de Melo BR, Ferreira Carioca AA, de Carvalho Sampaio HA. Acute postprandial effect of yacon syrup ingestion on appetite: A double blind randomized crossover clinical trial. Food Research International. 2020;137:109648. PubMed PMID: 33233227
  15. Gomes da Silva MF, Dionísio AP, Ferreira Carioca AA, Silveira Adriano L, Pinto CO, Pinto de Abreu FA, Wurlitzer NJ, Araújo IM, Dos Santos Garruti D, Ferreira Pontes D. Yacon syrup: Food applications and impact on satiety in healthy volunteers. Food Research International. 2017;100(Pt 1):460-467. PubMed PMID: 28873709
  16. de Souza Lima Sant'Anna M, Rodrigues VC, Araújo TF, de Oliveira TT, do Carmo Gouveia Peluzio M, de Luces Fortes Ferreira CL. Yacon-Based Product in the Modulation of Intestinal Constipation. Journal of Medicinal Food. 2015;18(9):980-986. PubMed PMID: 25692980
  17. Pan LH, Hu WF, Fu ZY, Yu XC, Li ZQ, Guo MF, Wu JW, Zhu H. Yacon (Smallanthus sonchifolius) Root Increases Bowel Movement Frequency in Healthy Adults via Modulating Gut Microbiota and Intestinal Metabolites: A Pilot Study. Molecular Nutrition & Food Research. 2026;70(1):e70358. PubMed PMID: 41452254
  18. Vaz-Tostes Md, Viana ML, Grancieri M, Luz TC, Paula Hd, Pedrosa RG, Costa NM. Yacon effects in immune response and nutritional status of iron and zinc in preschool children. Nutrition. 2014;30(6):666-672. PubMed PMID: 24631386
  19. Campos D, Betalleluz-Pallardel I, Chirinos R, Aguilar-Galvez A, Noratto G, Pedreschi R. Prebiotic effects of yacon (Smallanthus sonchifolius Poepp. & Endl), a source of fructooligosaccharides and phenolic compounds with antioxidant activity. Food Chemistry. 2012;135(3):1592-1599. PubMed PMID: 22953898
  20. Narai-Kanayama A, Tokita N, Aso K. Dependence of fructooligosaccharide content on activity of fructooligosaccharide-metabolizing enzymes in yacon (Smallanthus sonchifolius) tuberous roots during storage. Journal of Food Science. 2007;72(6):S381-S387. PubMed PMID: 17995694
  21. Jiménez ME, Sammán N. Chemical characterization and quantification of fructooligosaccharides, phenolic compounds and antiradical activity of Andean roots and tubers grown in Northwest of Argentina (article in Spanish). Archivos Latinoamericanos de Nutricion. 2014;64(2):131-138. PubMed PMID: 25799690
  22. Silva MFGD, Dionísio AP, Abreu FAP, Brito ES, Wurlitzer NJ, Silva LMAE, Ribeiro PRV, Rodrigues S, Taniguchi CAK, Pontes DF. Evaluation of nutritional and chemical composition of yacon syrup using 1H NMR and UPLC-ESI-Q-TOF-MS(E). Food Chemistry. 2018;245:1239-1247. PubMed PMID: 29287348
  23. Chessum K, Chen T, Kam R, Yan M. A Comprehensive Chemical and Nutritional Analysis of New Zealand Yacon Concentrate. Foods. 2022;12(1):74. PubMed PMID: 36613290
  24. Caetano BF, de Moura NA, Almeida AP, Dias MC, Sivieri K, Barbisan LF. Yacon (Smallanthus sonchifolius) as a Food Supplement: Health-Promoting Benefits of Fructooligosaccharides. Nutrients. 2016;8(7):436. PubMed PMID: 27455312
  25. Delgado GT, Tamashiro WM, Maróstica Junior MR, Pastore GM. Yacon (Smallanthus sonchifolius): a functional food. Plant Foods for Human Nutrition. 2013;68(3):222-228. PubMed PMID: 23709016
  26. Utami NW, Sone T, Tanaka M, Nakatsu CH, Saito A, Asano K. Comparison of Yacon (Smallanthus sonchifolius) Tuber with Commercialized Fructo-oligosaccharides (FOS) in Terms of Physiology, Fermentation Products and Intestinal Microbial Communities in Rats. Bioscience of Microbiota, Food and Health. 2013;32(4):167-178. PubMed PMID: 24936376
  27. Yun EY, Kim HS, Kim YE, Kang MK, Ma JE, Lee GD, Cho YJ, Kim HC, Lee JD, Hwang YS, Jeong YY. A case of anaphylaxis after the ingestion of yacon. Allergy, Asthma & Immunology Research. 2010;2(2):149-152. PubMed PMID: 20358031
  28. Genta SB, Cabrera WM, Grau A, Sánchez SS. Subchronic 4-month oral toxicity study of dried Smallanthus sonchifolius (yacon) roots as a diet supplement in rats. Food and Chemical Toxicology. 2005;43(11):1657-1665. PubMed PMID: 15979774
  29. de Oliveira RB, de Paula DA, Rocha BA, Franco JJ, Gobbo-Neto L, Uyemura SA, dos Santos WF, Da Costa FB. Renal toxicity caused by oral use of medicinal plants: the yacon example. Journal of Ethnopharmacology. 2011;133(2):434-441. PubMed PMID: 20951787
  30. Barcellona CS, Cabrera WM, Honoré SM, Mercado MI, Sánchez SS, Genta SB. Safety assessment of aqueous extract from leaf Smallanthus sonchifolius and its main active lactone, enhydrin. Journal of Ethnopharmacology. 2012;144(2):362-370. PubMed PMID: 23000115
  31. Li D, Gu Y. A comprehensive review of the traditional uses, edibility, phytochemistry, toxicology, and pharmacological effects of Yacon. Fitoterapia. 2026;194:107459. PubMed PMID: 42705423

PubMed Topic Searches

  1. PubMed: yacon randomised controlled trials
  2. PubMed: yacon fructooligosaccharides and gut bacteria
  3. PubMed: yacon storage and fructooligosaccharide content
  4. PubMed: yacon leaf toxicity

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Connections

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