Walnuts: Gut Microbiome and Urolithins


Most of what a walnut contains is absorbed in the small intestine, but not all of it. A share of its fibre and, above all, its tannin-type polyphenols travel on to the large intestine, where the trillions of bacteria living there get the first chance at them. Those bacteria turn walnut tannins into a family of small compounds called urolithins, which the walnut itself does not contain. This page follows that chain step by step: what the tannins are, how gut bacteria convert them, why people fall into three distinct "urolithin metabotypes", and what every human walnut feeding study that measured stool bacteria, short-chain fatty acids, bile acids or urolithins actually found. It also separates three things that are often blurred together — a shift in which bacteria are present, a change in a blood marker, and a health outcome — because the research so far is strongest on the first, thinner on the second, and has not yet reached the third.


Table of Contents

  1. What Reaches the Colon
  2. From Ellagitannin to Urolithin
  3. Urolithin Metabotypes A, B and 0
  4. The Human Walnut Feeding Trials
  5. Short-Chain Fatty Acids and Butyrate Producers
  6. Secondary Bile Acids
  7. Links to Cholesterol and Blood Pressure
  8. What the Pooled Reviews Conclude
  9. Urolithins Beyond the Gut: Early Human Associations
  10. Animal and Laboratory Work
  11. Urolithin Supplements Are a Separate Question
  12. What Is Not Known
  13. Who the Research Raises Concerns For
  14. Connections
  15. Key Research Papers
  16. Featured Videos

What Reaches the Colon

Three parts of a walnut matter for gut bacteria.

Processing changes the starting material. A food-chemistry study that baked walnut kernels found that heating at 165 °C for 30 minutes roughly doubled the free ellagic acid (an increase of 99.5%) while the tannin-bound fractions fell, meaning roasting shifts walnut tannins toward free ellagic acid before they are eaten. Whether that changes urolithin production in people was not tested.

From Ellagitannin to Urolithin

The chain runs in three steps.

  1. Tannin to ellagic acid. In the gut, ellagitannins such as pedunculagin are broken apart and release ellagic acid. A 2023 review describes this release as hydrolysis that happens at low pH.
  2. Ellagic acid to urolithins, by bacteria. Ellagic acid itself is poorly absorbed. Colon bacteria strip it down, ring by ring, into urolithins (chemically, hydroxy-dibenzopyranones). Intermediate forms such as urolithins C and D are made along the way; the end products most often measured are urolithin A, isourolithin A and urolithin B.
  3. Absorption and conjugation. Urolithins are absorbed, and the body attaches sugar-acid (glucuronide) or sulfate groups to them. The forms found in blood and urine are mostly these conjugates.

The proof that bacteria, not human enzymes, do step two came from the Spanish research group that first described urolithins in humans. In 2005, Cerdá and colleagues incubated stool samples from six volunteers with ellagic acid, the pomegranate tannin punicalagin, and a walnut ellagitannin extract under oxygen-free conditions. All three produced urolithin A in every volunteer's stool culture, but at very different rates and amounts from person to person. That same year the group fed 40 healthy volunteers a single serving of one of four tannin foods (strawberries 250 g, red raspberries 225 g, walnuts 35 g, or oak-aged red wine 300 mL). Neither the tannins nor ellagic acid appeared in urine; a urolithin B conjugate appeared in every participant 32–56 hours later. Walnuts gave the highest recovery — on average 16.6% of the ingested ellagitannins, against 2.8% for strawberries — and every group split into "high" and "low" excreters.

Later work identified some of the bacteria involved. Species of Gordonibacter make intermediate urolithins; in 2018 the group described a new genus, Ellagibacter isourolithinifaciens, isolated from healthy human stool, that converts ellagic acid into isourolithin A. Both belong to the Eggerthellaceae family. A 2022 review by the same group counts 13 urolithins and their conjugates described to date, found variously in urine, blood, stool, breast milk, prostate, colon and breast tissue. The same review cautions that many laboratory experiments used urolithin forms and concentrations that do not match what is found in the body, "making some reported urolithin activities questionable."

Walnuts are not the only source. Pomegranate (see Pomegranate: Punicalagins and Antioxidants), strawberries, raspberries and blackberries also carry ellagitannins, and the same bacteria convert them to the same urolithins.

Urolithin Metabotypes A, B and 0

When researchers looked at urolithins in urine across many feeding trials, people consistently fell into three groups, now called urolithin metabotypes (UM). A 2014 summary of intervention trials with walnuts and other nuts, strawberries, raspberries, other berries and pomegranate described them this way:

The three groups appeared regardless of age, sex, body mass index, and the amount or type of tannin food eaten. The same summary noted a higher share of metabotype B among volunteers with metabolic syndrome or colorectal cancer, conditions associated with altered gut bacteria. Put plainly: two people can eat the same handful of walnuts and end up with different urolithins in their blood, or none at all, because their gut bacteria differ.

Do metabotypes track heart-risk markers?

Two studies from the Spanish group examined this, and both describe correlations, not cause and effect.

Metabotype appears to start early in life. In a study of breastfeeding mothers who ate walnuts, total urolithins in breast milk ranged from 8.5 to 176.9 nanomolar, were absent in the milk of three mothers, and followed each mother's metabotype. When their infants' guts were tracked over the first year, the pattern of Gordonibacter colonisation followed the mother's metabotype, and neither breastfeeding nor vaginal birth was required for it; the authors suggest close mother–baby contact as the likely route.

The Human Walnut Feeding Trials

Below is every human walnut trial found for this page that sequenced stool bacteria, measured short-chain fatty acids or bile acids, or related bacteria to urolithins. Most are small, and several are crossover designs in which each person serves as their own control. "Relative abundance" means a bacterial group's share of all the bacteria sequenced — a rise in one group's share is not the same as more of that bacterium in absolute terms, and neither is a health outcome.

Holscher et al., 2018 (United States)

A controlled-feeding crossover trial in 18 healthy men and women (mean age 53, mean BMI 28.8). All food was provided; diets contained 0 or 42 g of walnuts a day for two 3-week periods with a 1-week washout. Compared with the control period, walnuts produced 49–160% higher relative abundance of Faecalibacterium, Clostridium, Dialister and Roseburia, and 16–38% lower relative abundance of Ruminococcus, Dorea, Oscillospira and Bifidobacterium. Stool secondary bile acids fell (see below) and LDL cholesterol was 7% lower. The authors note that Faecalibacterium and Roseburia belong to butyrate-producing Clostridium clusters IV and XIVa.

Bamberger et al., 2018 (Germany)

The largest trial: 194 healthy adults (134 women, mean age 63) in a randomised crossover design, 43 g of walnuts a day for 8 weeks against 8 weeks nut-free. Participants were told to cut fat, carbohydrate or both to make room for the walnut calories. Stool from 135 participants was sequenced. Walnut eating shifted overall bacterial composition by roughly 5% (p = 0.02). Ruminococcaceae and Bifidobacteria rose, while species of Clostridium cluster XIVa (Blautia, Anaerostipes) fell. Which macronutrient people swapped out made only a marginal difference. The authors call for longer studies and for linking the changes to the lipid improvements seen in the same trial. Note the opposite direction for Bifidobacterium compared with Holscher's trial. This trial was funded by a walnut industry body, which the authors state had no role in the analysis.

Tindall et al., 2020 (United States)

The cleverest design. Forty-two adults at raised cardiovascular risk (mean BMI 30, blood pressure 121/77, LDL 120 mg/dL) ate a 2-week standard Western diet, then three controlled diets for 6 weeks each in random order: a walnut diet (57–99 g walnuts a day, scaled to energy needs); a diet matching walnut fatty acids without any walnuts; and a diet in which oleic acid replaced the ALA. All three were low in saturated fat. Roseburia rose on both the walnut diet and the walnut-fatty-acid-matched diet, which the authors say the fat profile could explain. Only the whole-walnut diet enriched Gordonibacter relative to the fatty-acid-matched diet — the urolithin-producing genus, suggesting a non-fat walnut component (most plausibly the tannins) at work. After the walnut diet, Lachnospiraceae abundance was inversely correlated with blood pressure and lipid measures.

Petersen et al., 2023 (same trial, gene activity)

An exploratory analysis in 35 participants from the Tindall trial looked not at which bacteria were present but at which bacterial genes were being actively expressed (metatranscriptomics). The walnut diet (57 g per 2,100 kcal, 18% of energy) increased the diversity of expressed genes compared with both walnut-free diets, though the diversity of active species did not differ. Gordonibacter showed more active genes, including higher expression of glycine amidinotransferase, an enzyme on the pathway to homoarginine. The authors propose this as a "novel mechanism" but stress that it was exploratory and needs replication. The work was funded by a walnut industry body.

García-Mantrana et al., 2019 (Spain)

A short study: 27 healthy people ate 33 g of peeled raw walnuts a day for three days. Stool bacteria and short-chain fatty acids were measured, and participants were sorted by urinary metabotype. The bacteria of metabotype B people responded more: Gordonibacter rose only in metabotype B, while some Lachnospiraceae fell in metabotype A. Coprococcus and Collinsella rose in both, and acetate and propionate production increased. No control diet was used, so the three-day changes are before-and-after comparisons.

Liu et al., 2024 (United States)

Thirty-nine people ate 2 ounces (about 56 g) of walnuts a day for 21 days, with stool and urine collected before and after. Overall bacterial composition and diversity changed (both significant). The 13 genera most enriched after walnuts included Roseburia, Butyricicoccus, Eubacterium eligens, Lachnospira and Gordonibacter — but also Bilophila and Ruminococcus torques, groups not usually described as beneficial, a reminder that "walnuts changed the microbiome" covers mixed shifts. Twenty-six genera were associated with seven of the nine urolithins measured in urine, 22 of them positively after walnut eating. There was no walnut-free control group.

Herselman et al., 2022 (Australia)

A randomised trial in university students studying the effects of academic stress and daily walnuts. Academic stress was associated with lower gut bacterial diversity in female students, and walnut eating improved it. Effects in male students could not be established because there were too few of them.

Short-Chain Fatty Acids and Butyrate Producers

Short-chain fatty acids are what gut bacteria make when they ferment fibre. Butyrate is the main fuel for the cells lining the colon, and acetate and propionate are absorbed and used elsewhere. The walnut evidence on them comes in two kinds.

Secondary Bile Acids

The liver makes bile acids to help digest fat (see the bile acids animation). Those that reach the colon are converted by bacteria into "secondary" bile acids, chiefly deoxycholic acid and lithocholic acid. High levels of these two in the colon have been studied as possible contributors to colon inflammation and cancer.

Holscher's 2018 trial is the only human walnut trial in this set that measured them: after three weeks of 42 g a day, stool deoxycholic acid was 25% lower and lithocholic acid 45% lower than after the control diet. The authors describe these as proinflammatory secondary bile acids. In the in-vitro fermentation study, deoxycholic and iso-deoxycholic acid were also lower in fermented nut samples than in the control. One three-week trial in 18 people is the whole of the human evidence; it has not been repeated in a larger group, and it did not measure colon outcomes.

Links to Cholesterol and Blood Pressure

Several of these trials also measured heart-risk markers, which invites the question of whether the bacterial changes help explain them. What the studies report are associations within small groups; none showed that the bacteria caused the changes.

For context, a 2020 meta-analysis of 18 walnut trials (1,799 participants) found no overall effect of walnuts on systolic or diastolic blood pressure. Small subgroup effects were seen at doses of 40 g or less and with interventions of 8 weeks or longer, but the authors concluded the changes were too slight to matter clinically and that the analysis "does not support walnut consumption as a BP-lowering strategy."

What the Pooled Reviews Conclude

Three reviews have pooled nut-and-microbiome trials. Each includes walnut trials alongside almonds, pistachios and others, so their findings apply to nuts as a group.

For the same question about other nuts, see Pistachios: Gut Microbiome and Almonds: Gut Microbiome and Prebiotic.

Urolithins Beyond the Gut: Early Human Associations

Because urolithins are absorbed, researchers have begun asking whether urinary urolithin levels track anything outside the gut in walnut trials. These are correlations within trials, and each is a single study.

Animal and Laboratory Work

Much of the walnut-microbiome literature is in animals or cells. These studies help generate ideas but do not show what happens in people.

A 2024 review of walnut-derived compounds and intestinal inflammation gathers this preclinical work and frames it as a theoretical basis for future study in inflammatory bowel disease; it does not report human trials showing walnuts treat that disease.

Urolithin Supplements Are a Separate Question

Purified urolithin A is sold as a supplement, and the 2022 urolithin review notes that the first human intervention trials giving urolithin A itself have been carried out. Those trials are not walnut research, and their findings cannot be transferred to walnuts for three reasons:

The same caution applies to the large literature on urolithin A in cell lines and animals: those experiments often use concentrations or unconjugated forms that differ from what circulates in people, a limitation the urolithin research group itself highlights.

What Is Not Known

Who the Research Raises Concerns For

Decisions about diet changes for a medical condition belong with a clinician.

Connections

Key Research Papers

  1. Holscher HD, Guetterman HM, Swanson KS, et al. Walnut Consumption Alters the Gastrointestinal Microbiota, Microbially Derived Secondary Bile Acids, and Health Markers in Healthy Adults: A Randomized Controlled Trial. The Journal of nutrition. 2018;148(6):861-867. PubMed PMID: 29726951
  2. Bamberger C, Rossmeier A, Lechner K, et al. A Walnut-Enriched Diet Affects Gut Microbiome in Healthy Caucasian Subjects: A Randomized, Controlled Trial. Nutrients. 2018;10(2):244. PubMed PMID: 29470389
  3. Tindall AM, McLimans CJ, Petersen KS, et al. Walnuts and Vegetable Oils Containing Oleic Acid Differentially Affect the Gut Microbiota and Associations with Cardiovascular Risk Factors: Follow-up of a Randomized, Controlled, Feeding Trial in Adults at Risk for Cardiovascular Disease. The Journal of nutrition. 2020;150(4):806-817. PubMed PMID: 31848609
  4. Tindall AM, Petersen KS, Skulas-Ray AC, et al. Replacing Saturated Fat With Walnuts or Vegetable Oils Improves Central Blood Pressure and Serum Lipids in Adults at Risk for Cardiovascular Disease: A Randomized Controlled-Feeding Trial. Journal of the American Heart Association. 2019;8(9):e011512. PubMed PMID: 31039663
  5. Petersen KS, Chandra M, Chen See JR, et al. Walnut consumption and gut microbial metabolism: Results of an exploratory analysis from a randomized, crossover, controlled-feeding study. Clinical nutrition (Edinburgh, Scotland). 2023;42(11):2258-2269. PubMed PMID: 37826992
  6. García-Mantrana I, Calatayud M, Romo-Vaquero M, et al. Urolithin Metabotypes Can Determine the Modulation of Gut Microbiota in Healthy Individuals by Tracking Walnuts Consumption over Three Days. Nutrients. 2019;11(10):2483. PubMed PMID: 31623169
  7. Liu H, Birk JW, Provatas AA, et al. Correlation between intestinal microbiota and urolithin metabolism in a human walnut dietary intervention. BMC microbiology. 2024;24(1):476. PubMed PMID: 39548408
  8. Herselman MF, Bailey S, Deo P, et al. The Effects of Walnuts and Academic Stress on Mental Health, General Well-Being and the Gut Microbiota in a Sample of University Students: A Randomised Clinical Trial. Nutrients. 2022;14(22):4776. PubMed PMID: 36432461
  9. Selma MV, González-Sarrías A, Salas-Salvadó J, et al. The gut microbiota metabolism of pomegranate or walnut ellagitannins yields two urolithin-metabotypes that correlate with cardiometabolic risk biomarkers: Comparison between normoweight, overweight-obesity and metabolic syndrome. Clinical nutrition (Edinburgh, Scotland). 2018;37(3):897-905. PubMed PMID: 28347564
  10. Romo-Vaquero M, Cortés-Martín A, Loria-Kohen V, et al. Deciphering the Human Gut Microbiome of Urolithin Metabotypes: Association with Enterotypes and Potential Cardiometabolic Health Implications. Molecular nutrition & food research. 2019;63(4):e1800958. PubMed PMID: 30471188
  11. Tomás-Barberán FA, García-Villalba R, González-Sarrías A, et al. Ellagic acid metabolism by human gut microbiota: consistent observation of three urolithin phenotypes in intervention trials, independent of food source, age, and health status. Journal of agricultural and food chemistry. 2014;62(28):6535-8. PubMed PMID: 24976365
  12. Cerdá B, Tomás-Barberán FA, Espín JC. Metabolism of antioxidant and chemopreventive ellagitannins from strawberries, raspberries, walnuts, and oak-aged wine in humans: identification of biomarkers and individual variability. Journal of agricultural and food chemistry. 2005;53(2):227-35. PubMed PMID: 15656654
  13. Cerdá B, Periago P, Espín JC, et al. Identification of urolithin a as a metabolite produced by human colon microflora from ellagic acid and related compounds. Journal of agricultural and food chemistry. 2005;53(14):5571-6. PubMed PMID: 15998116
  14. Beltrán D, Romo-Vaquero M, Espín JC, et al. Ellagibacter isourolithinifaciens gen. nov., sp. nov., a new member of the family Eggerthellaceae, isolated from human gut. International journal of systematic and evolutionary microbiology. 2018;68(5):1707-1712. PubMed PMID: 29583112
  15. Cortés-Martín A, García-Villalba R, García-Mantrana I, et al. Urolithins in Human Breast Milk after Walnut Intake and Kinetics of Gordonibacter Colonization in Newly Born: The Role of Mothers' Urolithin Metabotypes. Journal of agricultural and food chemistry. 2020;68(45):12606-12616. PubMed PMID: 33135412
  16. García-Villalba R, Giménez-Bastida JA, Cortés-Martín A, et al. Urolithins: a Comprehensive Update on their Metabolism, Bioactivity, and Associated Gut Microbiota. Molecular nutrition & food research. 2022;66(21):e2101019. PubMed PMID: 35118817
  17. Mateș L, Banc R, Zaharie FA, et al. Mechanistic Insights into the Biological Effects and Antioxidant Activity of Walnut (Juglans regia L.) Ellagitannins: A Systematic Review. Antioxidants (Basel, Switzerland). 2024;13(8):974. PubMed PMID: 39199220
  18. Fan N, Fusco JL, Rosenberg DW. Antioxidant and Anti-Inflammatory Properties of Walnut Constituents: Focus on Personalized Cancer Prevention and the Microbiome. Antioxidants (Basel, Switzerland). 2023;12(5):982. PubMed PMID: 37237848
  19. Guo X, Gu F, Yang T, et al. Quantitative conversion of free, acid-hydrolyzable, and bound ellagic acid in walnut kernels during baking. Food chemistry. 2023;400:134070. PubMed PMID: 36084595
  20. Creedon AC, Hung ES, Berry SE, et al. Nuts and their Effect on Gut Microbiota, Gut Function and Symptoms in Adults: A Systematic Review and Meta-Analysis of Randomised Controlled Trials. Nutrients. 2020;12(8):2347. PubMed PMID: 32781516
  21. Fitzgerald E, Lambert K, Stanford J, et al. The effect of nut consumption (tree nuts and peanuts) on the gut microbiota of humans: a systematic review. The British journal of nutrition. 2021;125(5):508-520. PubMed PMID: 32713355
  22. Snelson M, Biesiekierski JR, Chen S, et al. Effects of Nut Intake on Gut Microbiome Composition and Gut Function in Adults: A Systematic Review and Meta-analysis. Advances in nutrition (Bethesda, Md.). 2025;16(7):100465. PubMed PMID: 40518048
  23. Li J, Jiang B, O Santos H, et al. Effects of walnut intake on blood pressure: A systematic review and meta-analysis of randomized controlled trials. Phytotherapy research : PTR. 2020;34(11):2921-2931. PubMed PMID: 32510725
  24. Tulipani S, Urpi-Sarda M, García-Villalba R, et al. Urolithins are the main urinary microbial-derived phenolic metabolites discriminating a moderate consumption of nuts in free-living subjects with diagnosed metabolic syndrome. Journal of agricultural and food chemistry. 2012;60(36):8930-40. PubMed PMID: 22631214
  25. Zerón-Rugerio MF, Parilli-Moser I, Gonzalez-Rodriguez A, et al. Walnut consumption improves mood and is associated with increased urinary excretion of 5-hydroxyindoleacetic acid and urolithins in a randomized crossover trial. Food & function. 2026;17(20):9107-9119. PubMed PMID: 42808314
  26. Galkina P, Domínguez-López I, Cofán M, et al. Microbiota-derived urolithins and cortical thickness in cognitively healthy older adults: a longitudinal MRI analysis of the WAHA trial. Food & function. 2026 (online ahead of print). PubMed PMID: 42841852
  27. Schlörmann W, Birringer M, Lochner A, et al. In vitro fermentation of nuts results in the formation of butyrate and c9,t11 conjugated linoleic acid as chemopreventive metabolites. European journal of nutrition. 2016;55(6):2063-73. PubMed PMID: 26286349
  28. Byerley LO, Samuelson D, Blanchard E 4th, et al. Changes in the gut microbial communities following addition of walnuts to the diet. The Journal of nutritional biochemistry. 2017;48:94-102. PubMed PMID: 28797931
  29. Nakanishi M, Chen Y, Qendro V, et al. Effects of Walnut Consumption on Colon Carcinogenesis and Microbial Community Structure. Cancer prevention research (Philadelphia, Pa.). 2016;9(8):692-703. PubMed PMID: 27215566
  30. Hong Z, Chen J, Shi C, et al. Polyphenol from walnut septum alleviates DSS-induced colonic injury by regulating the PI3K-AKT pathway signaling and gut microbiota in mice. Phytomedicine : international journal of phytotherapy and phytopharmacology. 2025;147:157193. PubMed PMID: 40916236
  31. Zhi T, Hong D, Zhang Z, et al. Anti-inflammatory and gut microbiota regulatory effects of walnut protein derived peptide LPF in vivo. Food research international (Ottawa, Ont.). 2022;152:110875. PubMed PMID: 35181066
  32. Si H, Yan W, Jun S, et al. Modulation of cecal microbiota and fecal metabolism in mice by walnut protein. Food & function. 2024;15(3):1689-1704. PubMed PMID: 38251959
  33. Dai K, Agarwal N, Rodriguez-Palacios A, et al. Regulation of Intestinal Inflammation by Walnut-Derived Bioactive Compounds. Nutrients. 2024;16(16):2643. PubMed PMID: 39203780

PubMed Topic Searches

  1. Walnut and gut microbiota trials
  2. Walnut and urolithins
  3. Urolithin metabotypes
  4. Walnut ellagitannins and pedunculagin
  5. Nuts and the gut microbiome: pooled analyses
  6. Urolithin-producing bacteria